Error in importing Salmon quantification to R using tximeta
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Entering edit mode
June. ▴ 10
@june-23879
Last seen 4.3 years ago

Hi,

I am following the workflow (https://bioconductor.org/packages/release/workflows/vignettes/rnaseqGene/inst/doc/rnaseqGene.html) for RNA-Seq with DESeq2. There, to import Salmon coldata file to R with tximeta, I get this error and I haven't find a solution for it on the web:

library("tximeta")
se <- tximeta(coldata)

**Error in FUN(X[[i]], ...) : file.exists(jsonPath) is not TRUE**

How to solve it?

Thanks in advance.

deseq2 tximeta • 958 views
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@mikelove
Last seen 19 hours ago
United States

This error is telling you that The files are not available as expected. This could mean that the data package was not installed perhaps?

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