Question

Cannot install DeSeq on RStudio version 6.3.2

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enriqueza • 0

@enriqueza-23824

Last seen 4.2 years ago

Hello,

I am trying to install DeSeq on my RStudio, but it is not working. Is it because of the version I have (3.6.2) or something else? Thanks for the help!

deseq2 • 471 views

ADD COMMENT • link updated 4.2 years ago by Kevin Blighe ★ 4.0k • written 4.2 years ago by enriqueza • 0

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You need to provide more information, like cutting and pasting what happens when you do

library(BiocManager)
BiocManager::install("DESeq")

and the output from running sessionInfo().

Also, do note that DESeq has been deprecated and you should be using DESeq2 instead.

ADD REPLY • link 4.2 years ago James W. MacDonald 67k

score 1 · Answer 1 · 2020-07-07

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Kevin Blighe ★ 4.0k

@kevin

Last seen 4 weeks ago

Republic of Ireland

If you mean the package DESeq, it is (or will be) deprecated. Instead, you may want to install DESeq2, via:

if (!requireNamespace('BiocManager', quietly = TRUE))
  install.packages('BiocManager')

BiocManager::install('DESeq2')

Kevin

ADD COMMENT • link 4.2 years ago Kevin Blighe ★ 4.0k