Here's my code:
library(MethylMix)
library(doParallel)
cancerSite <- "HNSC"
targetDirectory <- paste0(getwd(), "/")
GetData(cancerSite, targetDirectory)
# Downloading methylation data
METdirectories <- Download_DNAmethylation(cancerSite, targetDirectory)
# Processing methylation data
METProcessedData <- Preprocess_DNAmethylation(cancerSite, METdirectories)
# Saving methylation processed data
saveRDS(METProcessedData, file = paste0(targetDirectory, "MET_", cancerSite, "_Processed.rds"))
I'm running this for over 48 hours, but still stuck in "Finding nonparametric adjustments". Is there any wrong with my code? What should I do?
Thank you!