Entering edit mode
I have an MsnSet object which I would like to use for the differential analysis of the proteomics data using spectral counts information. Below is the MsnSet object and I am wondering how to add the "phenoData" in this object. Kindly help
> msnset
MSnSet (storageMode: lockedEnvironment)
assayData: 1535 features, 27 samples
element names: exprs
protocolData: none
phenoData: none
featureData
featureNames: sp|A0A075B6H7|KV37_HUMAN sp|A0A075B6H9|LV469_HUMAN ...
tr|V9GZ38|V9GZ38_HUMAN (1535 total)
fvarLabels: peptide accession
fvarMetadata: labelDescription
experimentData: use 'experimentData(object)'
Annotation:
- - - Processing information - - -
Subset [16227,27][6518,27] Tue Jun 9 22:14:01 2020
Combined 6518 features into 1535 using sum: Tue Jun 9 22:14:02 2020
MSnbase version: 2.10.1 `
I removed the DESeq2 tag from this post, as this is out of scope for support at least.