Hi, there seems to be a problem with decideTests (limma package): results<-decideTests(fit2, adjust.method="BH") gives a table with probe IDs as row names if the methods "separate" or "global" are used. With methods "heirarchical" and "nestedF" however, row names are missing. Is this a feature the purpose of which I do not understand? This is limma 2.6.2 and R 2.3.0 Best, Georg