Entering edit mode
Context Trying to load ggcyto library for the autoplot() function.
> search()
[1] ".GlobalEnv" "package:shiny" "package:CytoExploreR" "package:openCyto" "package:flowWorkspace"
[6] "package:flowCore" "tools:rstudio" "package:stats" "package:graphics" "package:grDevices"
[11] "package:utils" "package:datasets" "package:methods" "Autoloads" "package:base"
> library(ggcyto)
Loading required package: ggplot2
Error in value[[3L]](cond) :
Package ‘ggplot2’ version 3.3.0 cannot be unloaded:
Error in unloadNamespace(package) : namespace ‘ggplot2’ is imported by ‘flowAI’ so cannot be unloaded
> sessionInfo()
R version 4.0.0 (2020-04-24)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] shiny_1.4.0.2 CytoExploreR_1.0.7 openCyto_2.1.0 flowWorkspace_4.1.2 flowCore_2.1.0
loaded via a namespace (and not attached):
[1] Rtsne_0.15 colorspace_1.4-1 ellipsis_0.3.1 mclust_5.4.6 rprojroot_1.3-2 cytolib_2.1.2
[7] corpcor_1.6.9 fs_1.4.1 clue_0.3-57 rstudioapi_0.11 hexbin_1.28.1 IDPmisc_1.1.20
[13] remotes_2.1.1 RSpectra_0.16-0 fansi_0.4.1 mvtnorm_1.1-0 splines_4.0.0 R.methodsS3_1.8.0
[19] mnormt_1.5-7 robustbase_0.93-6 knitr_1.28 shinythemes_1.1.2 pkgload_1.0.2 jsonlite_1.6.1
[25] umap_0.2.5.0 cluster_2.1.0 png_0.1-7 R.oo_1.23.0 graph_1.66.0 BiocManager_1.30.10
[31] rrcov_1.5-2 compiler_4.0.0 backports_1.1.7 fastmap_1.0.1 assertthat_0.2.1 Matrix_1.2-18
[37] cli_2.0.2 later_1.0.0 visNetwork_2.0.9 htmltools_0.4.0 prettyunits_1.1.1 tools_4.0.0
[43] ncdfFlow_2.34.0 rsvd_1.0.3 gtable_0.3.0 glue_1.4.1 reshape2_1.4.4 dplyr_0.8.5
[49] Rcpp_1.0.4.6 Biobase_2.48.0 vctrs_0.3.0 changepoint_2.2.2 xfun_0.14 stringr_1.4.0
[55] ps_1.3.3 testthat_2.3.2 mime_0.9 lifecycle_0.2.0 gtools_3.8.2 devtools_2.3.0
[61] XML_3.99-0.3 DEoptimR_1.0-8 zlibbioc_1.34.0 MASS_7.3-51.6 zoo_1.8-8 scales_1.1.1
[67] EmbedSOM_2.1.1 RProtoBufLib_2.1.0 promises_1.1.0 parallel_4.0.0 RBGL_1.64.0 RColorBrewer_1.1-2
[73] yaml_2.2.1 curl_4.3 reticulate_1.15 memoise_1.1.0 ggplot2_3.3.1 latticeExtra_0.6-29
[79] stringi_1.4.6 desc_1.2.0 pcaPP_1.9-73 flowClust_3.26.0 flowAI_1.19.1 BiocGenerics_0.35.2
[85] pkgbuild_1.0.8 flowViz_1.53.0 rlang_0.4.6 pkgconfig_2.0.3 matrixStats_0.56.0 evaluate_0.14
[91] fda_5.1.4 lattice_0.20-41 purrr_0.3.4 ks_1.11.7 htmlwidgets_1.5.1 processx_3.4.2
[97] tidyselect_1.1.0 plyr_1.8.6 magrittr_1.5 R6_2.4.1 pillar_1.4.4 withr_2.2.0
[103] tibble_3.0.1 crayon_1.3.4 KernSmooth_2.23-17 ellipse_0.4.2 rhandsontable_0.3.7 rmarkdown_2.1
[109] jpeg_0.1-8.1 usethis_1.6.1 grid_4.0.0 data.table_1.12.8 callr_3.4.3 Rgraphviz_2.32.0
[115] digest_0.6.25 xtable_1.8-4 tidyr_1.1.0 httpuv_1.5.2 R.utils_2.9.2 flowStats_4.1.0
[121] openssl_1.4.1 RcppParallel_5.0.1 stats4_4.0.0 munsell_0.5.0 askpass_1.1 sessioninfo_1.1.1
I cannot reproduce this using the current versions of
flowCore
,flowWorkspace
,openCyto
,ggcyto
,CytoExploreR
, andflowAI
in any load order I've tried. Can you please provide an exact reproducible example from a new R session? I need to know all of the calls beforelibrary(ggcyto)
.