Hi, thanks for the bug report -- there were actually two bugs, one in vsn and one in R. The vsn one has been fixed and the new version should start to propagate. The R bug has also been fixed and that too will gradually work its way out. Robert On Wed, Apr 30, 2003 at 08:39:01AM -0700, Mahbub Latif wrote: > Hi, > > I am trying to use vsn package for analysing my data. > To show what I am facing I consider the following > example which one can reproduce. > > > > >set.seed(123) > >cy3 <- matrix(rnorm(30,5,1),nrow=10) > > >set.seed(222) > >cy5 <- matrix(rnorm(30,2,2), nrow=10) > > >cy <- cbind(cy3, cy5) > > >library(vsn) > > Funny things are happenning. After loading vsn package > (library(vsn)) I cannot use some functions such as > summary. For example, > > > summary(cy3) > Segmentation fault > > or > > >cy1 <- data.frame(cy) > >cy1 > Segmentation fault > > and R terminated. But the same function work peoperly > before loading vsn package. Some other functions I > have cheked do not work after loading vsn package such > as plot functions of lattice package. > > It would be great if someone help me on this. Before > (when I sent my previous request) I thought this > happen only to lymphoma data but now I found loading > vsn package affects some R base functions. > > >version > platform i686-pc-linux-gnu > arch i686 > os linux-gnu > system i686, linux-gnu > status > major 1 > minor 7.0 > year 2003 > month 04 > day 16 > language R > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor -- +--------------------------------------------------------------------- ------+ | Robert Gentleman phone : (617) 632-5250 | | Associate Professor fax: (617) 632-2444 | | Department of Biostatistics office: M1B20 | | Harvard School of Public Health email: rgentlem@jimmy.harvard.edu | +--------------------------------------------------------------------- ------+