Hi: There is a problem with installing bioconductor. When use BiocManager::install("bioconductor"), it failed and reminded as follows
BiocManager::install("bioconductor") Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.3 (2020-02-29) Installing package(s) 'bioconductor' Old packages: 'lattice', 'nlme', 'RCurl', 'xml2' Update all/some/none? [a/s/n]: a
There are binary versions available but the source versions are later: binary source needs_compilation RCurl 1.98-1.1 1.98-1.2 TRUE xml2 1.3.1 1.3.2 TRUE
Binaries will be installed 试开URL’https://mirrors.tongji.edu.cn/CRAN/bin/windows/contrib/3.6/lattice_0.20-41.zip' Content type 'application/zip' length 1174332 bytes (1.1 MB) downloaded 1.1 MB
试开URL’https://mirrors.tongji.edu.cn/CRAN/bin/windows/contrib/3.6/nlme_3.1-147.zip' Content type 'application/zip' length 2374568 bytes (2.3 MB) downloaded 2.3 MB
试开URL’https://mirrors.tongji.edu.cn/CRAN/bin/windows/contrib/3.6/RCurl_1.98-1.1.zip' Content type 'application/zip' length 2988412 bytes (2.8 MB) downloaded 2.8 MB
试开URL’https://mirrors.tongji.edu.cn/CRAN/bin/windows/contrib/3.6/xml2_1.3.1.zip' Content type 'application/zip' length 3179066 bytes (3.0 MB) downloaded 3.0 MB
package ‘lattice’ successfully unpacked and MD5 sums checked package ‘nlme’ successfully unpacked and MD5 sums checked package ‘RCurl’ successfully unpacked and MD5 sums checked package ‘xml2’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in C:\Users\Administrator\AppData\Local\Temp\RtmpuKnCyy\downloaded_packages Warning message: package ‘bioconductor’ is not available (for R version 3.6.3)
Many thanks to help me.
problem solved when use: if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install(version = "3.10")
problem solved when use: if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install(version = "3.10")