Is there any thought of putting together a Bioconductor cookbook, or are there some already out there? I've found bits and pieces, and have been putting together bits and pieces myself as I learn how to do them. The tutorials, the courses, the monograph are all WONDERFUL - BUT - there are so many things out there I want to do with my data, and knowing how to do them with the prepackaged, preprocessed "ALL" or "kidpack" data sets does not necessarily tell me how to apply them to my random mess of 39 .CEL files. I've heard at least one other biologist and one statistician voice the same desire for an R/Bioconductor cookbook. Heather E. Hallen Research Associate Department of Plant Biology 166 Plant Biology Laboratories Michigan State University East Lansing, MI 48824-1312 USA

not sure if it's the 'cookbook' you're after, but this book: http://www.bioconductor.org/docs/mogr Bioinformatics and Computational Biology Solutions Using R and Bioconductor Editors: Robert Gentleman, Vince Carey, Wolfgang Huber, Rafael Irizarry, Sandrine Dudoit is incrediby awesome. Thank You, -mL Matthew Lyon lab (951) 827 4736 Ph.D. Student in Botany and Plant Sciences cell (626) 298 3008 Laboratory of Mikeal Roose, Citrus Genomics UCR Citrus website at: http://int-citrusgenomics.org/usa/ucr/ >From: "Heather Erika Hallen" <hallenhe at="" msu.edu=""> >To: bioconductor at stat.math.ethz.ch >Subject: [BioC] Bioconductor cookbook? >Date: Fri, 19 May 2006 15:03:22 -0400 > >Is there any thought of putting together a Bioconductor cookbook, or are >there some already out there? I've found bits and pieces, and have been >putting together bits and pieces myself as I learn how to do them. The >tutorials, the courses, the monograph are all WONDERFUL - BUT - there are >so >many things out there I want to do with my data, and knowing how to do them >with the prepackaged, preprocessed "ALL" or "kidpack" data sets does not >necessarily tell me how to apply them to my random mess of 39 .CEL files. >I've heard at least one other biologist and one statistician voice the same >desire for an R/Bioconductor cookbook. > > >Heather E. Hallen >Research Associate >Department of Plant Biology >166 Plant Biology Laboratories >Michigan State University >East Lansing, MI 48824-1312 USA > >_______________________________________________ >Bioconductor mailing list >Bioconductor at stat.math.ethz.ch >https://stat.ethz.ch/mailman/listinfo/bioconductor >Search the archives: >http://news.gmane.org/gmane.science.biology.informatics.conductor

Being a new-comer to this product and going through the book right now I definitely support this idea. Regards, Reinhard ********************************************************************** ******* Reinhard Simon Head of Research Informatics Unit International Potato Center (CIP) Centro Internacional de la Papa Address: Apartado 1558, Lima 12, PERU Phone: (51-1) 3496017 ext 3025 e-mail: r.simon at cgiar.org; web: http://www.cipotato.org CIP is supported by the Consultative Group on International Agricultural Research ********************************************************************** ******* -----Original Message----- From: bioconductor-bounces@stat.math.ethz.ch [mailto:bioconductor-bounces at stat.math.ethz.ch]On Behalf Of Heather Erika Hallen Sent: Friday, May 19, 2006 2:03 PM To: bioconductor at stat.math.ethz.ch Subject: [BioC] Bioconductor cookbook? Is there any thought of putting together a Bioconductor cookbook, or are there some already out there? I've found bits and pieces, and have been putting together bits and pieces myself as I learn how to do them. The tutorials, the courses, the monograph are all WONDERFUL - BUT - there are so many things out there I want to do with my data, and knowing how to do them with the prepackaged, preprocessed "ALL" or "kidpack" data sets does not necessarily tell me how to apply them to my random mess of 39 .CEL files. I've heard at least one other biologist and one statistician voice the same desire for an R/Bioconductor cookbook. Heather E. Hallen Research Associate Department of Plant Biology 166 Plant Biology Laboratories Michigan State University East Lansing, MI 48824-1312 USA _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor

Do RSiteSearch("cookbook") at the R prompt to see some prior discussion of this topic on R-help. Andy From: Simon, Reinhard > > Being a new-comer to this product and going through the book > right now I definitely support this idea. > > Regards, > > Reinhard > > ************************************************************** > *************** > Reinhard Simon > Head of Research Informatics Unit > International Potato Center (CIP) Centro Internacional de la Papa > Address: Apartado 1558, Lima 12, PERU > Phone: (51-1) 3496017 ext 3025 > e-mail: r.simon at cgiar.org; web: http://www.cipotato.org CIP > is supported by the Consultative Group on International > Agricultural Research > ************************************************************** > *************** > > > -----Original Message----- > From: bioconductor-bounces at stat.math.ethz.ch > [mailto:bioconductor-bounces at stat.math.ethz.ch]On Behalf Of > Heather Erika Hallen > Sent: Friday, May 19, 2006 2:03 PM > To: bioconductor at stat.math.ethz.ch > Subject: [BioC] Bioconductor cookbook? > > > Is there any thought of putting together a Bioconductor > cookbook, or are there some already out there? I've found > bits and pieces, and have been putting together bits and > pieces myself as I learn how to do them. The tutorials, the > courses, the monograph are all WONDERFUL - BUT - there are so > many things out there I want to do with my data, and knowing > how to do them with the prepackaged, preprocessed "ALL" or > "kidpack" data sets does not necessarily tell me how to apply > them to my random mess of 39 .CEL files. > I've heard at least one other biologist and one statistician > voice the same desire for an R/Bioconductor cookbook. > > > Heather E. Hallen > Research Associate > Department of Plant Biology > 166 Plant Biology Laboratories > Michigan State University > East Lansing, MI 48824-1312 USA > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > >