Hi Matthias,
I am getting below error while running the plotCoverage function:
plotCoverage(qseaSet, samples=getSampleNames(qseaSet), chr=20, start=29243001, end=29243250, norm_method="beta", col=rep(c("red", "green"), 16), yoffset=1,space=.1, cex=.7 )
selecting specified Region selecting specified ROIs obtaining raw values for 32 samples in 1 windows deriving beta values... Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
Regards
Gaurav
R version 3.6.0 (2019-04-26) Platform: x86_64-redhat-linux-gnu (64-bit) Running under: CentOS Linux 7 (Core)
Matrix products: default BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so
locale:
[1] LCCTYPE=enUS.UTF-8 LCNUMERIC=C LCTIME=enUS.UTF-8 LCCOLLATE=enUS.UTF-8
[5] LCMONETARY=enUS.UTF-8 LCMESSAGES=enUS.UTF-8 LCPAPER=enUS.UTF-8 LCNAME=C
[9] LCADDRESS=C LCTELEPHONE=C LCMEASUREMENT=enUS.UTF-8 LC_IDENTIFICATION=C
attached base packages: [1] stats4 parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] Haplin7.2.2 pbatR2.2-13
[3] MEDIPSData1.22.0 biomaRt2.42.1
[5] MEDIPS1.38.0 Rsamtools2.2.3
[7] GenomicDataCommons1.10.0 magrittr1.5
[9] BiocParallel1.20.1 BSgenome.Hsapiens.NCBI.GRCh381.3.1000
[11] BSgenome1.54.0 rtracklayer1.46.0
[13] Biostrings2.54.0 XVector0.26.0
[15] GenomicRanges1.38.0 GenomeInfoDb1.22.1
[17] IRanges2.20.2 S4Vectors0.24.4
[19] BiocGenerics0.32.0 qsea1.12.0
loaded via a namespace (and not attached):
[1] nlme3.1-147 bitops1.0-6 matrixStats0.56.0
[4] bit640.9-7 progress1.2.2 httr1.4.1
[7] tools3.6.0 R62.4.1 DBI1.1.0
[10] mgcv1.8-31 DNAcopy1.60.0 tidyselect1.0.0
[13] prettyunits1.1.1 bit1.1-15.2 curl4.3
[16] compiler3.6.0 preprocessCore1.48.0 cli2.0.2
[19] Biobase2.46.0 xml21.3.1 DelayedArray0.12.3
[22] readr1.3.1 askpass1.1 rappdirs0.3.1
[25] stringr1.4.0 digest0.6.25 pkgconfig2.0.3
[28] highr0.8 dbplyr1.4.2 limma3.42.2
[31] rlang0.4.5 rstudioapi0.11 RSQLite2.2.0
[34] zoo1.8-7 jsonlite1.6.1 gtools3.8.2
[37] dplyr0.8.5 RCurl1.98-1.1 GenomeInfoDbData1.2.2
[40] Matrix1.2-18 Rcpp1.0.4.6 fansi0.4.1
[43] lifecycle0.2.0 stringi1.4.6 MASS7.3-51.5
[46] SummarizedExperiment1.16.1 rootSolve1.8.2 zlibbioc1.32.0
[49] HMMcopy1.28.1 BiocFileCache1.10.2 grid3.6.0
[52] blob1.2.1 crayon1.3.4 lattice0.20-41
[55] splines3.6.0 hms0.5.3 knitr1.28
[58] pillar1.4.3 tcltk3.6.0 ffbase0.12.8
[61] fastmatch1.1-0 XML3.99-0.3 glue1.4.0
[64] data.table1.12.8 vctrs0.2.4 openssl1.4.1
[67] purrr0.3.3 tidyr1.0.2 assertthat0.2.1
[70] xfun0.13 ff2.2-14 survival3.1-12
[73] tibble3.0.0 GenomicAlignments1.22.1 AnnotationDbi1.48.0
[76] memoise1.1.0 ellipsis_0.3.0
