R circlize package problem with drawing histogram
0
0
Entering edit mode
marvel479 • 0
@marvel479-23217
Last seen 4.7 years ago

Forgive my confusion, but I can't figure out the correct usage of circlize package to draw a histogram. I want to draw a histogram for one of its tracks and would like to use my read counts for Y-axis, and the x should be the genomic position, however wide or narrow. The syntax however is:

circos.trackHist(factors, x, ....)

that doesn't work though. How should I imply that my x should have chromosome no., start and stop position information, the bin height being no. of reads, for each row?

I am assuming I can write:

circos.trackHist(factors = mydataframe$reads, x = x)

This is what my file looks like: head(dataframe)

Chrom Start End Reads 1 chr1 42938268 42938392 2 2 chr1 63224349 63225050 2 3 chr1 71646172 71646228 2 4 chr1 72904979 72905055 2 5 chr1 138065763 138065817 2 6 chr1 164635940 164635994 2

circlize R Circos Plots • 996 views
ADD COMMENT
0
Entering edit mode

Just linking these up: https://www.biostars.org/p/429801/

ADD REPLY

Login before adding your answer.

Traffic: 893 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6