Hello, please note R version 3.6.2 with bioconductor 3.10 will not install properly. Both a colleague and myself had the same issue. The problem appears to be with oligo and specifically this:

No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘oligo’

Below I reprint the commands and then the session info. I am on a Mac running Sierra 10.12.6. Thank you for any help.

BiocManager::install("maEndToEnd")
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.2 (2019-12-12)
Installing package(s) 'maEndToEnd'
installing the source package ‘maEndToEnd’

trying URL 'https://bioconductor.org/packages/3.10/workflows/src/contrib/maEndToEnd_2.6.0.tar.gz'
Content type 'application/x-gzip' length 5676291 bytes (5.4 MB)
==================================================
downloaded 5.4 MB

* installing *source* package ‘maEndToEnd’ ...
** using staged installation
** inst
** help
No man pages found in package  ‘maEndToEnd’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘oligo’
Error: package or namespace load failed for ‘arrayQualityMetrics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Library/Frameworks/R.framework/Versions/3.6/Resources/library/systemfonts/libs/systemfonts.so':
  dlopen(/Library/Frameworks/R.framework/Versions/3.6/Resources/library/systemfonts/libs/systemfonts.so, 6): Library not loaded: /opt/X11/lib/libfreetype.6.dylib
  Referenced from: /Library/Frameworks/R.framework/Versions/3.6/Resources/library/systemfonts/libs/systemfonts.so
  Reason: image not found
Error : package ‘arrayQualityMetrics’ could not be loaded
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/maEndToEnd’

The downloaded source packages are in
    ‘/private/var/folders/hj/1wvjfb692c3gswybcg8xdcwm0000gn/T/RtmpSy9jZV/downloaded_packages’
Warning message:
In install.packages(...) :
  installation of package ‘maEndToEnd’ had non-zero exit status

The sessionInfo() command returns:

> sessionInfo()
R version 3.6.2 (2019-12-12)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Sierra 10.12.6

Matrix products: default
BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats4    parallel  stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] oligo_1.50.0        Biostrings_2.54.0   XVector_0.26.0      IRanges_2.20.2      S4Vectors_0.24.3    Biobase_2.46.0     
 [7] oligoClasses_1.48.0 BiocGenerics_0.32.0 plotly_4.9.2        pheatmap_1.0.12     openxlsx_4.1.4      ggrepel_0.8.2      
[13] ggplot2_3.3.0       edgeR_3.28.1        limma_3.42.2        biomaRt_2.42.1     

loaded via a namespace (and not attached):
 [1] bitops_1.0-6                matrixStats_0.56.0          bit64_0.9-7                 RColorBrewer_1.1-2         
 [5] progress_1.2.2              httr_1.4.1                  GenomeInfoDb_1.22.1         tools_3.6.2                
 [9] R6_2.4.1                    affyio_1.56.0               DBI_1.1.0                   lazyeval_0.2.2             
[13] colorspace_1.4-1            withr_2.1.2                 tidyselect_1.0.0            prettyunits_1.1.1          
[17] bit_1.1-15.2                curl_4.3                    compiler_3.6.2              preprocessCore_1.48.0      
[21] DelayedArray_0.12.2         scales_1.1.0                askpass_1.1                 rappdirs_0.3.1             
[25] stringr_1.4.0               digest_0.6.25               pkgconfig_2.0.3             htmltools_0.4.0            
[29] dbplyr_1.4.2                htmlwidgets_1.5.1           rlang_0.4.5                 rstudioapi_0.11            
[33] RSQLite_2.2.0               jsonlite_1.6.1              BiocParallel_1.20.1         dplyr_0.8.5                
[37] zip_2.0.4                   RCurl_1.98-1.1              magrittr_1.5                GenomeInfoDbData_1.2.2     
[41] Matrix_1.2-18               Rcpp_1.0.4                  munsell_0.5.0               lifecycle_0.2.0            
[45] stringi_1.4.6               SummarizedExperiment_1.16.1 zlibbioc_1.32.0             BiocFileCache_1.10.2       
[49] grid_3.6.2                  affxparser_1.58.0           blob_1.2.1                  crayon_1.3.4               
[53] lattice_0.20-40             splines_3.6.2               hms_0.5.3                   locfit_1.5-9.4             
[57] pillar_1.4.3                GenomicRanges_1.38.0        codetools_0.2-16            XML_3.99-0.3               
[61] glue_1.3.2                  data.table_1.12.8           BiocManager_1.30.10         vctrs_0.2.4                
[65] foreach_1.4.8               gtable_0.3.0                openssl_1.4.1               purrr_0.3.3                
[69] tidyr_1.0.2                 assertthat_0.2.1            ff_2.2-14                   viridisLite_0.3.0          
[73] tibble_2.1.3                iterators_1.0.12            AnnotationDbi_1.48.0        memoise_1.1.0

Any help would be greatly appreciated