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hkitano
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@hkitano-23077
Last seen 4.7 years ago
I'm trying to load in peaksets from a BED file (the summits output from macs2 callpeaks), and I'm running into an error
Here's what the first line of my BED file looks like:
chr1 4785666 4785667 BMDM-RNAPIIpS2-CTR-1-ChIPseq-GTACACCT_S9_L003_R1_001_peak_1 18.38304
And my DiffBind call us
ctr <- dba.peakset(NULL,
peaks="BMDM-RNAPIIpS2-CTR-1-ChIPseq-GTACACCT_S9_L003_R1_001_summits.bed",
peak.caller="bed",
sampID="CTR-1",
replicate=1)
My error reads "Error in if file.info(peaks)$size > 0) { : missing value where TRUE/FALSE needed"
What is the issue? I'm new to DiffBind so I'm not sure what's going on. Thank you!
sorry, my working directory was wrong!