Hi, I have found something strange in one environment of the GO library: >library(GO) > class(GOLOCUSID2GO) Error: recursive default argument reference ..indeed I'm not able to get any GO term from EntreGene ids. I think it should return: > class(GOLOCUSID) [1] "environment" > sessionInfo() Version 2.3.0 (2006-04-24) x86_64-unknown-linux-gnu attached base packages: [1] "methods" "stats" "graphics" "grDevices" "utils" "datasets" [7] "base" other attached packages: GO "1.12.0" thanks -- Mattia Pelizzola PhD Student Genopolis Consortium Milano-Bicocca University P.zza della Scienza 4 20126 Milano (Italy) tel:+390264483556 fax:+390264483552

Mattia Pelizzola wrote: > Hi, > > I have found something strange in one environment of the GO library: > >>library(GO) >>class(GOLOCUSID2GO) > > Error: recursive default argument reference I wonder if you just need to re-install GO? I don't have any problems with this package: > class(GOLOCUSID2GO) [1] "environment" > sessionInfo() R version 2.4.0 Under development (unstable) (2006-05-01 r37954) x86_64-unknown-linux-gnu attached base packages: [1] "tcltk" "tools" "methods" "stats" "graphics" "grDevices" [7] "utils" "datasets" "base" other attached packages: GO "1.12.0" > Best, Jim > > ..indeed I'm not able to get any GO term from EntreGene ids. > I think it should return: > >>class(GOLOCUSID) > > [1] "environment" > > > >>sessionInfo() > > Version 2.3.0 (2006-04-24) > x86_64-unknown-linux-gnu > > attached base packages: > [1] "methods" "stats" "graphics" "grDevices" "utils" "datasets" > [7] "base" > > other attached packages: > GO > "1.12.0" > > > thanks > > -- James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.