Perhaps a rather naive question, but is there a way to see the summary statistics for all of the genes following a lmFit and Ebayes? The documentation shows using the topTable to get the top 10 genes. Is there a way to extract the logFC, AveExpr, t, P.Value, adj.P.Val, and B for all the genes?

Take a closer look at documentation for the number parameter in ?topTable.

I most often call topTable() with number = Inf then manipulate the resulting data.frame using your favorite data.frame-manipulating maneuvers to focus into subset of genes I might be interested in.