Gviz GeneRegionTrack labels on Y ais
1
0
Entering edit mode
@fenton-christopher-graham-5504
Last seen 4.9 years ago

Plotting read coverage over generegion track with Giz. Selecting gene region by location chr, start, stop. I get several transcripts that start outside the defined region, hence no transcript label in plot. I could label exons, but that is messy. Has anyone solved how to label these transcripts?

Chris

annotation • 421 views
ADD COMMENT
0
Entering edit mode
@james-w-macdonald-5106
Last seen 8 hours ago
United States

As an example

library(Gviz)
data(cyp2b10)
grTrack <- GeneRegionTrack(cyp2b10, showID = TRUE, just.group = "above")
plotTracks(grTrack, showId=TRUE) 
plotTracks(grTrack, showId=TRUE,from=25911238, to = 25917285 ) 

ADD COMMENT

Login before adding your answer.

Traffic: 519 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6