ReportingTools: Error using packet 1 arguments must have same length

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mmokrejs • 0

@mmokrejs-16289

Last seen 5.8 years ago

Hi, I have some output from DESeq2 to be processed by ReportingTools. In thread C: DESeq2: Error using packet 1 arguments must have same length it turned out it is a ReportigTools issue. Would you please comment on this error, visible only in rendered figures?

library(ReportingTools)
desReport <- HTMLReport(shortName = "RNAseq_analysis_with_DESeq",
                        title = "Results of differential expression analysis using DESeq2 (cancer vs. normal)",
                        reportDirectory = "./reports")
publish(res, desReport, DataSet = dds, n = 50, pvalueCutoff = 0.01, lfc = 1,
        make.plots = TRUE, factor = dds$dex)
finish(desReport)

Thank you,

reportingtools • 1.8k views

ADD COMMENT • link 6.0 years ago mmokrejs • 0

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Hi,

I had the same error. I think the error is caused by the lattice package. I could fix this, by setting factor (which I hadn't done before). This might indicate that something is wrong with the value of factor.

HTH, Christoph

ADD REPLY • link 4.9 years ago christoph.kaempf • 0

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