siamcat install problems
0
0
Entering edit mode
@gaiotransposon-22414
Last seen 5.0 years ago

Hi,

I am aware that you guys are working on a soon to be released siamcat version. However, as I am impatient I am trying to work with the 1.6 version, but I am getting this error even when using your example data:

install.packages("~/Downloads/SIAMCAT_1.6.0.tgz", repos = NULL, type = .Platform$pkgType)
library(SIAMCAT)

data("feat_crc_zeller", package="SIAMCAT")
data("meta_crc_zeller", package="SIAMCAT")

label <- create.label(meta=meta.crc.zeller,
                         label='Group', case='CRC')

siamcat <- siamcat(feat=feat.crc.zeller,
           label=label,
           meta=meta.crc.zeller)

Getting the error: Error in validObject(.Object) : invalid class “otutable” object: superclass "vectorOR_Vector" not defined in the environment of the object's class

Could you please tell me what's going on?

I also tried siamcat 1.4, getting the same error message as above.

When installing Siamcat 1.7: Error in create.label(meta = meta.crc.zeller, label = "Group", case = "CRC") : lazy-load database '/Users/12705859/Library/R/3.6/library/SIAMCAT/data/Rdata.rdb' is corrupt

My R version: R version 3.6.1 (2019-07-05)

thank you

siamcat • 650 views
ADD COMMENT

Login before adding your answer.

Traffic: 535 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6