Actually, there are a few things about the information that is stored
in
the exon CDF file that are a little bit non-standard relative to other
expression arrays and so I would expect it to have problems producing
a
reasonable cdfenv.
On a tangentially related note, if you are interested in RMA
summarizing
affy exon data there is preliminary support in RMAExpress for doing so
(and you can always read the output of that back into
R/BioConductor),
Best,
Ben
On Sat, 2006-04-08 at 17:22 +0200, Michael Seewald wrote:
> Dear all,
>
> Is it possible to analyze Affymetrix exon arrays with
R/Bioconductor? I
> tried to generate a cdf environment with makecdfenv (as suggested by
James),
> however the command never finished. The R process grows until it
takes about
> 8 GB of RAM, then it is stuck.
>
> I am grateful for any help or advice.
>
> Best wishes,
> Michael
>
