I realize I don't know what the official way to upgrade an existing Bioconductor 3.9 on R 3.6.1 to Bioconductor 3.10, which was released yesterday (2019-10-30). I've looked at https://bioconductor.org/news/bioc310_release/ and https://bioconductor.org/install/ but I don't think they say how to upgrade - only how to install if you don't already have Bioconductor installed. What's the official go-to approach for upgrading?
Here is what I have:
$ R --vanilla
R version 3.6.1 Patched (2019-09-12 r77183) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
...
> packageVersion("BiocManager")
[1] '1.30.9'
> BiocManager::version()
[1] '3.9'
> packageVersion("BiocVersion")
[1] '3.9.0'
> BiocManager::install()
Bioconductor version 3.9 (BiocManager 1.30.9), R 3.6.1 Patched (2019-09-12 r77183)
PS. https://bioconductor.org/install/ says Bioconductor 3.10 "works with R version 3.6.0" whereas https://bioconductor.org/news/bioc310_release/ suggests it requires "R >=3.6.1".
Ah... I see. Thxs
I'd like to suggest that a section on 'Upgrading from a previous Bioconductor version' with this is added to https://bioconductor.org/install/