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Last seen 5.0 years ago
I installed org.Hs.eg.db by click packages-install-from package archive file-browse. Because no way works. But when I installed this package I can't library it. Does my Chinese User name matters? Any one konws how to make it working? Here are the Console outputs below.
> install.packages("C:/Users/好兔几/AppData/Local/Temp/RtmpUVNC4k/downloaded_packages/org.Hs.eg.db_3.8.2.tar.gz", repos = NULL, type = "source", lib="C:/Program Files/R/R-3.6.1/library")
* installing *source* package 'org.Hs.eg.db' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loa**strong text**ding
** help
*** installing help indices
converting help for package 'org.Hs.eg.db'
finding HTML links ... done
org.Hs.egACCNUM html
org.Hs.egALIAS2EG html
org.Hs.egBASE html
org.Hs.egCHR html
org.Hs.egCHRLENGTHS html
org.Hs.egCHRLOC html
org.Hs.egENSEMBL html
org.Hs.egENSEMBLPROT html
org.Hs.egENSEMBLTRANS html
org.Hs.egENZYME html
org.Hs.egGENENAME html
org.Hs.egGO html
org.Hs.egMAP html
org.Hs.egMAPCOUNTS html
org.Hs.egOMIM html
org.Hs.egORGANISM html
org.Hs.egPATH html
org.Hs.egPFAM html
org.Hs.egPMID html
org.Hs.egPROSITE html
org.Hs.egREFSEQ html
org.Hs.egSYMBOL html
org.Hs.egUCSCKG html
org.Hs.egUNIGENE html
org.Hs.egUNIPROT html
org.Hs.eg_dbconn html
** building package indices
** testing if installed package can be loaded from temporary location
*** arch - i386
*** arch - x64
** testing if installed package can be loaded from final location
*** arch - i386
*** arch - x64
** testing if installed package keeps a record of temporary installation path
* DONE (org.Hs.eg.db)
> library(org.Hs.eg.db, lib.loc = "C:/Program Files/R/R-3.6.1/library")
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport,
clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply,
parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname,
do.call, duplicated, eval, evalq, Filter, Find, get, grep, grepl,
intersect, is.unsorted, lapply, Map, mapply, match, mget, order, paste,
pmax, pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce, rownames,
sapply, setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with 'browseVignettes()'. To
cite Bioconductor, see 'citation("Biobase")', and for packages
'citation("pkgname")'.
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:base’:
expand.grid
Attaching package: ‘IRanges’
The following object is masked from ‘package:grDevices’:
windows
Error: package or namespace load failed for ‘org.Hs.eg.db’:
.onLoad failed in loadNamespace() for 'org.Hs.eg.db', details:
call: NULL
error: Failed to load extension: 找不到指定的模块
。
The error "找不到指定的模块" does not come from R or Bioconductor. Is this in a Jupyter notebook? Can you arrange to use paths with only ASCII characters?
Absolutely it comes from RStudio. I also use Jupyter, but I didn't even open it. Do you mean using only english paths? I tried this but it comes out the same way. I
install.packages("C:/org.Hs.eg.db_3.8.2.tar.gz", repos = NULL, type = "source", lib="C:/Program Files/R/R-3.6.1/library") DONE (org.Hs.eg.db)
library(org.Hs.eg.db, lib.loc = "C:/Program Files/R/R-3.6.1/library") Error: package or namespace load failed for ‘org.Hs.eg.db’: .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details: call: NULL error: Failed to load extension: 找不到指定的模块。