Entering edit mode
When I install the scater
package it's not bringing in the plotQC()
function. I get this error:
library(scater)
scater::plotQC()
could not find function "plotQC"
This is my sessionInfo()
:
R version 3.6.1 (2019-07-05)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 17763)
Matrix products: default
locale:
[1] LC_COLLATE=English_Canada.1252 LC_CTYPE=English_Canada.1252
[3] LC_MONETARY=English_Canada.1252 LC_NUMERIC=C
[5] LC_TIME=English_Canada.1252
attached base packages:
[1] parallel stats4 stats graphics grDevices utils datasets methods
[9] base
other attached packages:
[1] scater_1.12.2 ggplot2_3.2.1
[3] SingleCellExperiment_1.6.0 SummarizedExperiment_1.14.1
[5] DelayedArray_0.10.0 BiocParallel_1.18.1
[7] matrixStats_0.55.0 Biobase_2.44.0
[9] GenomicRanges_1.36.1 GenomeInfoDb_1.20.0
[11] IRanges_2.18.3 S4Vectors_0.22.1
[13] BiocGenerics_0.30.0
loaded via a namespace (and not attached):
[1] Rcpp_1.0.2 vipor_0.4.5 compiler_3.6.1
[4] pillar_1.4.2 XVector_0.24.0 viridis_0.5.1
[7] DelayedMatrixStats_1.6.1 BiocNeighbors_1.2.0 bitops_1.0-6
[10] tools_3.6.1 zlibbioc_1.30.0 packrat_0.5.0
[13] viridisLite_0.3.0 tibble_2.1.3 gtable_0.3.0
[16] lattice_0.20-38 pkgconfig_2.0.3 rlang_0.4.0
[19] Matrix_1.2-17 rstudioapi_0.10 beeswarm_0.2.3
[22] gridExtra_2.3 GenomeInfoDbData_1.2.1 withr_2.1.2
[25] dplyr_0.8.3 grid_3.6.1 tidyselect_0.2.5
[28] glue_1.3.1 R6_2.4.0 ggbeeswarm_0.6.0
[31] irlba_2.3.3 BiocSingular_1.0.0 purrr_0.3.3
[34] magrittr_1.5 scales_1.0.0 rsvd_1.0.2
[37] assertthat_0.2.1 colorspace_1.4-1 RCurl_1.95-4.12
[40] lazyeval_0.2.2 munsell_0.5.0 crayon_1.3.4