I would like to merge two SummarizedExperiment datasets. Both have the same assays,rownames, row data names but different colnames, colData names. Thank you.
batch1
class: RangedSummarizedExperiment
dim: 49736 20
metadata(0):
assays(13): fpkm posterior_mean_count ... fpkm_ci_upperbound fpkm_coefficient_quartile_variation
rownames(49736): ENSG00000000003 ENSG00000000005 ... ENSG00000273492 ENSG00000273493
rowData names(9): gene hgnc ... transcript_count entrezgene
colnames(27): 24-21064 24-21067 ... 24-21242 24-21245
colData names(216): INDIVIDUAL_ID SAMPLE_ID ... gender age
batch2
class: RangedSummarizedExperiment
dim: 49736 80
metadata(0):
assays(13): fpkm posterior_mean_count ... fpkm_ci_upperbound fpkm_coefficient_quartile_variation
rownames(49736): ENSG00000000003 ENSG00000000005 ... ENSG00000273492 ENSG00000273493
rowData names(9): gene hgnc ... transcript_count entrezgene
colnames(83): SAMPLE1-77-005-60 SAMPLE2-47-006-60 ... SAMPLE3-95-004-70 SAMPLE4-47-045-60
colData names(223): INDIVIDUAL_ID LIBRARY_ID ... kit status
You’ve tagged this with DESeq2 but really it’s a SummarizedExperiment post.