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ls760
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@ls760-20976
Last seen 4.8 years ago
Hello,
Is the biomaRt server down? I can't make BiomaRt library working. I am interested in several features and genes of GRCh38
> library("biomaRt")
Warning messages:
1: package ‘ggplot2’ was built under R version 3.5.2
2: package ‘tibble’ was built under R version 3.5.2
3: package ‘tidyr’ was built under R version 3.5.2
4: package ‘purrr’ was built under R version 3.5.2
5: package ‘dplyr’ was built under R version 3.5.2
6: package ‘stringr’ was built under R version 3.5.2
7: package ‘forcats’ was built under R version 3.5.2
> listMarts()
Error in listMarts() : Unexpected format to the list of available marts.
Please check the following URL manually, and try ?listMarts for advice.
http://www.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt
> mart <- useMart("ensembl","hsapiens_gene_ensembl", host = "useast.ensembl.org")
Error in listMarts(host = host, path = path, port = port, includeHosts = TRUE, :
Unexpected format to the list of available marts.
Please check the following URL manually, and try ?listMarts for advice.
http://useast.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt
> listMarts(host="www.ensembl.org")
Error in listMarts(host = "www.ensembl.org") :
Unexpected format to the list of available marts.
Please check the following URL manually, and try ?listMarts for advice.
http://www.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt
> listEnsembl()
Error in listMarts(mart = mart, host = host, verbose = verbose) :
Unexpected format to the list of available marts.
Please check the following URL manually, and try ?listMarts for advice.
http://www.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt
Any advice would be much appreciated, Thanks
It's working now, I don't know what I did wrong. Thanks.