Question

gene Isoforms quantification using RNA-seq data

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angel.campos • 0

@angelcampos-9083

Last seen 4.1 years ago

Which are the available packages in Bioconductor to quantify gene isoforms?

TIA

gene isoform quantification rna-seq • 1.3k views

ADD COMMENT • link updated 5.3 years ago by swbarnes2 ★ 1.4k • written 5.3 years ago by angel.campos • 0

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RSEM is best option you can go for

ADD REPLY • link 5.3 years ago chudar.chudar ▴ 30

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Salmon is very good, rsem is also good but very slow. The above comment could be misleading.

ADD REPLY • link 5.3 years ago chris86 ▴ 420

score 1 · Answer 1 · 2019-08-28

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swbarnes2 ★ 1.4k

@swbarnes2-14086

Last seen 1 day ago

San Diego

I think Salmon and Kallisto will quantify isoforms as well, but I don't think any of those are available through bioconductor

ADD COMMENT • link 5.3 years ago swbarnes2 ★ 1.4k

score 0 · Answer 2 · 2019-08-28

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chudar.chudar ▴ 30

@chudarchudar-9587

Last seen 5.3 years ago

ADD COMMENT • link 5.3 years ago chudar.chudar ▴ 30