Entering edit mode
Is there a way to avoid BiocGenerics, S4Vectors, IRanges, and Biostrings from being attached when calling BSgenome::getBSgenome() ?
bsgenome <- BSgenome::getBSgenome('mm10')
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply,
parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
anyDuplicated, append, as.data.frame, basename,
cbind, colnames, dirname, do.call, duplicated, eval,
evalq, Filter, Find, get, grep, grepl, intersect, is.unsorted,
lapply, Map, mapply, match, mget, order, paste, pmax,
pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce,
rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which, which.max, which.min
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:base’:
expand.grid
Attaching package: ‘IRanges’
The following object is masked from ‘package:grDevices’:
windows
Attaching package: ‘Biostrings’
The following object is masked from ‘package:base’:
strsplit
This works, but relies on using (BioC non-complyingly) non-exported functionality - can this be done better?