Hello, I'm in trouble with Rgraphviz installation. I've installed R 2.2.0 on SUSE linux 10.0 R graph package is installed, and LD_LIBRARY_PATH is set to my graphviz lib path I first tried with Graphviz version 2.8 and get a huge error message when trying to install Rgraphviz 1.8.0. Then I tried with Graphviz 1.12, and I get a different (smaller) error message : >R CMD INSTALL Rgraphviz_1.8.0.tar.gz * Installing *source* package 'Rgraphviz' ... checking for graphviz... checking for dotneato-config... /usr/local/bin/dotneato-config /usr/local/bin/dotneato-config configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -I/usr/local/lib/R/include -I/usr/local/include/graphviz -DGRAPHVIZ_1_12 -I/usr/local/include -fPIC -g -O2 -c Rgraphviz.c -o Rgraphviz.o In file included from /usr/local/include/graphviz/render.h:49, from common.h:32, from Rgraphviz.c:1: /usr/local/include/graphviz/macros.h:28:1: warning: "NEW" redefined In file included from common.h:15, from Rgraphviz.c:1: /usr/local/lib/R/include/Rdefines.h:134:1: warning: this is the location of the previous definition In file included from common.h:37, from Rgraphviz.c:1: /usr/local/include/graphviz/renderprocs.h:11: error: redefinition of `nodesizefn_t' /usr/local/include/graphviz/renderprocs.h:11: error: `nodesizefn_t' previously declared here /usr/local/include/graphviz/renderprocs.h:16: error: conflicting types for `splineInfo' /usr/local/include/graphviz/renderprocs.h:16: error: previous declaration of `splineInfo' /usr/local/include/graphviz/renderprocs.h:30: error: conflicting types for `clip_and_install' /usr/local/include/graphviz/renderprocs.h:30: error: previous declaration of `clip_and_install' make: *** [Rgraphviz.o] Error 1 ERROR: compilation failed for package 'Rgraphviz' ** Removing '/usr/local/lib/R/library/Rgraphviz' Any help would be greatly appreciated. Best Regards Nicolas -- Nicolas Simonis, PhD. Research fellow Vidal lab Center for Cancer Systems Biology Dana Farber Cancer Institute 1 Jimmy Fund Way, SM856 Boston MA 02115 (+1) 617.6323728

hello, other than the abacus package outta davis's dros group are there any other affy-56-tiled SNP analysis packages out there? something part of affy.bioc perhaps? you can point me to a vigenette if ya want. Thank You, -mL 951.328.9930 apartment ------------------------------------------------------------------ Matthew Lyon lab (951) 827-4736 Ph.D. Student in Botany and Plant Sciences cell (626) 298-3008 Laboratory of Mikeal Roose, Citrus Genomics

Hi Nicolas, Nicolas Simonis <nicolas_simonis at="" dfci.harvard.edu=""> writes: > I'm in trouble with Rgraphviz installation. > > I've installed R 2.2.0 on SUSE linux 10.0 > R graph package is installed, and LD_LIBRARY_PATH is set to my graphviz lib > path > I first tried with Graphviz version 2.8 and get a huge error message when > trying to install Rgraphviz 1.8.0. It might help to see the message. It might also be worth trying the devel version of Rgraphviz (install using R CMD INSTALL on the downloaded tarball). > Then I tried with Graphviz 1.12, and I get a different (smaller) > error Hmm, that's a really old version of graphviz. + seth