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Is it possible to download taxonomy based on gene Id for a large dataset from NCBI using biomartr package?
vi arsM.ID.txt
AAAK03000116.1
AAAL02000001.1
AACD01000079.1
AACS02000002.1
AADV02000002.1
AADV02000014.1
AADV02000142.1
AADV02000157.1
AADV02000160.1
AADV02000163.1
AAEK01000011.1
AAEK01000037.1
AAEW02000007.1
AAEW02000015.1
AAEW02000015.1
taxonomy format should be like below:
I need taxonomy in this format:
AM774418.1 Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium Halobacterium salinarum R1
LOPV01000533.1 Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax Haloferax sp. SB29
CP003125.1 Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus; Geobacillus thermoleovorans group Geobacillus
BAWP01000033.1 Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Parageobacillus Parageobacillus thermoglucosidasius NBRC
MEFJ01000016.1 Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Thiobacillaceae; Thiobacillus Thiobacillus sp. SCN
FXAE01000009.1 Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus Paenibacillus barengoltzii J12