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ERROR MESSAGES
=====================================================
> BiocManager::install("oligo")
Bioconductor version 3.9 (BiocManager 1.30.4), R 3.6.1 (2019-07-05)
Installing package(s) 'oligo'
also installing the dependencies ‘RCurl’, ‘GenomeInfoDb’, ‘GenomicRanges’, ‘SummarizedExperiment’, ‘oligoClasses’
URL 'https://cloud.r-project.org/src/contrib/RCurl_1.95-4.12.tar.gz'을 시도합니다
Content type 'application/x-gzip' length 916763 bytes (895 KB)
==================================================
downloaded 895 KB
URL 'https://bioconductor.org/packages/3.9/bioc/src/contrib/GenomeInfoDb_1.20.0.tar.gz'을 시도합니다
Content type 'application/x-gzip' length 3405894 bytes (3.2 MB)
==================================================
downloaded 3.2 MB
URL 'https://bioconductor.org/packages/3.9/bioc/src/contrib/GenomicRanges_1.36.0.tar.gz'을 시도합니다
Content type 'application/x-gzip' length 1160485 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
URL 'https://bioconductor.org/packages/3.9/bioc/src/contrib/SummarizedExperiment_1.14.0.tar.gz'을 시도합니다
Content type 'application/x-gzip' length 1488171 bytes (1.4 MB)
==================================================
downloaded 1.4 MB
URL 'https://bioconductor.org/packages/3.9/bioc/src/contrib/oligoClasses_1.46.0.tar.gz'을 시도합니다
Content type 'application/x-gzip' length 372116 bytes (363 KB)
==================================================
downloaded 363 KB
URL 'https://bioconductor.org/packages/3.9/bioc/src/contrib/oligo_1.48.0.tar.gz'을 시도합니다
Content type 'application/x-gzip' length 28421048 bytes (27.1 MB)
==================================================
downloaded 27.1 MB
* installing *source* package ‘RCurl’ ...
** 패키지 ‘RCurl’는 성공적으로 압축해제되었고, MD5 sums 이 확인되었습니다
** using staged installation
checking for curl-config... no
Cannot find curl-config
ERROR: configuration failed for package ‘RCurl’
* removing ‘/home/cy/R/x86_64-pc-linux-gnu-library/3.6/RCurl’
ERROR: dependency ‘RCurl’ is not available for package ‘GenomeInfoDb’
* removing ‘/home/cy/R/x86_64-pc-linux-gnu-library/3.6/GenomeInfoDb’
ERROR: dependency ‘GenomeInfoDb’ is not available for package ‘GenomicRanges’
* removing ‘/home/cy/R/x86_64-pc-linux-gnu-library/3.6/GenomicRanges’
ERROR: dependencies ‘GenomicRanges’, ‘GenomeInfoDb’ are not available for package ‘SummarizedExperiment’
* removing ‘/home/cy/R/x86_64-pc-linux-gnu-library/3.6/SummarizedExperiment’
ERROR: dependencies ‘GenomicRanges’, ‘SummarizedExperiment’ are not available for package ‘oligoClasses’
* removing ‘/home/cy/R/x86_64-pc-linux-gnu-library/3.6/oligoClasses’
ERROR: dependency ‘oligoClasses’ is not available for package ‘oligo’
* removing ‘/home/cy/R/x86_64-pc-linux-gnu-library/3.6/oligo’
The downloaded source packages are in
‘/tmp/RtmpmnZOmY/downloaded_packages’
installation path not writeable, unable to update packages: C50, Cubist, data.table, e1071, Formula, glue, inum, libcoin,
magrittr, mvtnorm, partykit, plyr, Rcpp, reshape2, RInside, RSNNS, stringi, stringr, xgboost, boot, class, codetools,
foreign, KernSmooth, lattice, MASS, Matrix, mgcv, nnet, spatial, survival
경고메시지(들):
1: In install.packages(pkgs = doing, lib = lib, repos = repos, ...) :
installation of package ‘RCurl’ had non-zero exit status
2: In install.packages(pkgs = doing, lib = lib, repos = repos, ...) :
installation of package ‘GenomeInfoDb’ had non-zero exit status
3: In install.packages(pkgs = doing, lib = lib, repos = repos, ...) :
installation of package ‘GenomicRanges’ had non-zero exit status
4: In install.packages(pkgs = doing, lib = lib, repos = repos, ...) :
installation of package ‘SummarizedExperiment’ had non-zero exit status
5: In install.packages(pkgs = doing, lib = lib, repos = repos, ...) :
installation of package ‘oligoClasses’ had non-zero exit status
6: In install.packages(pkgs = doing, lib = lib, repos = repos, ...) :
installation of package ‘oligo’ had non-zero exit status
===================================================================
version : 3.6.1
How can I fixed it? please, check this error quickly, Thank you so much