Hi, Bioconductor and R noob here. While trying to install RNA-seq workflow I ran into several warning messages. Not sure how this will affect functionality down the road. I would appreciate suggestions on how to proceed forward.
Here are the warning messages:
> warnings()
Warning messages:
1: In install.packages(pkgs = doing, lib = lib, repos = repos, ... :
installation of package ‘Rhtslib’ had non-zero exit status
2: In install.packages(pkgs = doing, lib = lib, repos = repos, ... :
installation of package ‘Rsamtools’ had non-zero exit status
3: In install.packages(pkgs = doing, lib = lib, repos = repos, ... :
installation of package ‘GenomicAlignments’ had non-zero exit status
4: In install.packages(pkgs = doing, lib = lib, repos = repos, ... :
installation of package ‘ShortRead’ had non-zero exit status
5: In install.packages(pkgs = doing, lib = lib, repos = repos, ... :
installation of package ‘rtracklayer’ had non-zero exit status
6: In install.packages(pkgs = doing, lib = lib, repos = repos, ... :
installation of package ‘BSgenome’ had non-zero exit status
7: In install.packages(pkgs = doing, lib = lib, repos = repos, ... :
installation of package ‘GenomicFeatures’ had non-zero exit status
8: In install.packages(pkgs = doing, lib = lib, repos = repos, ... :
installation of package ‘VariantAnnotation’ had non-zero exit status
9: In install.packages(pkgs = doing, lib = lib, repos = repos, ... :
installation of package ‘OrganismDbi’ had non-zero exit status
10: In install.packages(pkgs = doing, lib = lib, repos = repos, ... :
installation of package ‘ensembldb’ had non-zero exit status
11: In install.packages(pkgs = doing, lib = lib, repos = repos, ... :
installation of package ‘EDASeq’ had non-zero exit status
12: In install.packages(pkgs = doing, lib = lib, repos = repos, ... :
installation of package ‘biovizBase’ had non-zero exit status
13: In install.packages(pkgs = doing, lib = lib, repos = repos, ... :
installation of package ‘RUVSeq’ had non-zero exit status
14: In install.packages(pkgs = doing, lib = lib, repos = repos, ... :
installation of package ‘ggbio’ had non-zero exit status
15: In install.packages(pkgs = doing, lib = lib, repos = repos, ... :
installation of package ‘Gviz’ had non-zero exit status
16: In install.packages(pkgs = doing, lib = lib, repos = repos, ... :
installation of package ‘ReportingTools’ had non-zero exit status
17: In install.packages(pkgs = doing, lib = lib, repos = repos, ... :
installation of package ‘rnaseqGene’ had non-zero exit status
----
> traceback()
No traceback available
I am on Mac OS High Sierra 10.13.6 and R version 3.6.0 (2019-04-26).