Question

What does SNPRelate::snpgdsDiss calculate?

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grp2009 • 0

@grp2009-11057

Last seen 5.5 years ago

The documentation for the snpgdsDiss function in the SNPRelate package says:

The details will be described in future.

The description of the function is

Calculate the individual dissimilarities for each pair of individuals.

What exactly does this function calculate and where can I find it defined?

SNPRelate • 980 views

ADD COMMENT • link updated 5.5 years ago by zhengx ▴ 30 • written 5.5 years ago by grp2009 • 0

score 1 · Answer 1 · 2019-06-18

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zhengx ▴ 30

@zhengx-7950

Last seen 5.4 years ago

United States

See: Weir BS, Goudet J. A Unified Characterization of Population Structure and Relatedness. Genetics. 2017 Aug;206(4):2085-2103. doi: 10.1534/genetics.116.198424.

snpgdsDiss() returns 1 - beta_ij.

ADD COMMENT • link 5.5 years ago zhengx ▴ 30