Hi everybody,
I am currently start working with Gviz (thanks for the amazing package), but have a small issue with the interaction track: I use makeGenomicInteractionsFromFile() and InteractionTrack() on a bedpe file. Everything works fine, but the arcs are squeezed against the top border (see image https://imgur.com/sut9uHn ).
I tried to cheat my way around by modifying the counts columns to a lower number or changing different display parameters (e.g. for title rotation hic.track@dp@pars$rotation.title <- 0).
Is there another way to either change the arc height or somehow prevent them to be cut at the back of the bow?
Thank you very much!
Hi Nik,
If you provide me with a reproducible example I can have a look what could be implemented in
Gviz
to improve your visualisation.Best, Robert