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Hello everyone, I want to use ReactomePA after have performed differential expression analysis. From the bioconductor webite the first codes to run are this
library(ReactomePA)
data(geneList)
de <- names(geneList)[abs(geneList) > 1.5]
Is it not clear to me what kind of "geneList" file is required to run this code? Can I use the output of DESeq2 ?
Thank you