ComplexHeatmap package will not display heatmaps

0

Entering edit mode

jmKeith • 0

@jmkeith-11960

Last seen 5.6 years ago

Hi, I'm having an issue with the ComplexHeatmap package. Specifically, when I try to create the heatmap image, R returns the parameters of the map but not the actual image. No errors are reported however. When I use the regular base "heatmap" function, I get an image just fine.

This is what is displayed in my console when I try to use ComplexHeatmap :

> Heatmap(myMatrix)
coords: 0 11 
nseq: 15 
obs: 165 
scale: 0 1273690 
label:

Does anyone have any suggestions as to what may be the problem?

ComplexHeatmap software error • 2.8k views

ADD COMMENT • link updated 5.6 years ago by James W. MacDonald 67k • written 5.6 years ago by jmKeith • 0

0

Entering edit mode

Can you make sure to not accidentally call another function in your global namespace by calling the Heatmap function explicitly via ComplexHeatmap::Heatmap(myMatrix)?

ADD REPLY • link 5.6 years ago Jens Preussner ▴ 30

Login before adding your answer.