Error in intramodularConnectivity(ADJ1, colorh1) : object 'colorh1' not found
1
0
Entering edit mode
@pratikshasharma47-20320
Last seen 5.6 years ago

Hi I am using WGCNA for my affymetrix data

ADJ1=abs(cor(eset,use="p"))^6
Alldegrees1=intramodularConnectivity(ADJ1, colorh1)
Error in intramodularConnectivity(ADJ1, colorh1) : object 'colorh1' not found

this is the error that appears , any suggestions would be heplful, thank you.

error wgcna affymetrix data • 929 views
ADD COMMENT
0
Entering edit mode
@peter-langfelder-4469
Last seen 12 days ago
United States

Your code probably does not define colorh1 anywhere before you attempt to use it in your code that you posted.

But there's no way to tell because you did not post a reproducible example or at least full code. (If the above is the full code, it clearly misses the definition of colorh1.) It is best to follow WGCNA tutorials first and then carefully adapt them to your data.

ADD COMMENT

Login before adding your answer.

Traffic: 751 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6