Entering edit mode
@francescogualdrini-20233
Last seen 5.5 years ago
Hi,
I have an issue with pathview running in a loop. I have multiple lists of genes (Entrez ids) and their log2 fold change as numeric vectors. When I loop through them and loop through all metabolic human pathways I get the png figure with no colours even if in the pv.out$plot.data.gene I do get matches but are all set to white.
Any idea why?
Thanks a lot
Francesco
Can you provide a short, self-contained, example of the code you're using? It's much easier for people to offer advice if they can start with a copy/paste example.