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Hi, Is there any package which works similarly as SPIA (Signaling Pathway Impact Analysis ) package? I have log fold change values for a list of genes. Now, I want to use them for different pathway enrichment analyses to find out which pathway is up - or down- regulated.
when searching Bioconductor package for enrichment analysis (search box to the right)
The following packages are found: gage miRNApath CHRONOS
You can also search the biocViews terms (search box to the left) Pathways Gene Set Enrichment Network Enrichment
Or any other terms you think are relevant to find packages that may be of use.