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83310199
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@83310199-20052
Last seen 5.8 years ago
hi there! i'm a new R runner, when i try to use Limma package to analyze cel files. there is an unexpected error:
# Perfect-match probes
pm.data <- pm(data.raw)
> pm.data <- pm(data.raw)
Error in getCdfInfo(object) :
Could not obtain CDF environment, problems encountered:
Specified environment does not contain Clariom_D_Human
Library - package clariomdhumancdf not installed
Bioconductor - clariomdhumancdf not available
> BiocManager::install('clariomdhumancdf')
Bioconductor version 3.8 (BiocManager 1.30.4), R 3.5.1
(2018-07-02)
Installing package(s) 'clariomdhumancdf'
Update old packages: 'openssl'
Update all/some/none? [a/s/n]:
a
There is a binary version available but the source
version is later:
binary source needs_compilation
openssl 1.2.1 1.2.2 TRUE
Binaries will be installed
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/openssl_1.2.1.zip'
Content type 'application/zip' length 3944621 bytes (3.8 MB)
downloaded 3.8 MB
package ‘openssl’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\aa\AppData\Local\Temp\RtmpWg5aNt\downloaded_packages
Warning message:
package ‘clariomdhumancdf’ is not available (for R version 3.5.1)
when i try to run another command, the same error occurs again:
> boxplot(data.raw, col = cols, xlab = "Sample", ylab = "Log intensity")
Error in getCdfInfo(object) :
Could not obtain CDF environment, problems encountered:
Specified environment does not contain Clariom_D_Human
Library - package clariomdhumancdf not installed
Bioconductor - clariomdhumancdf not available
how can i fix this bug? thanks for your advise :)