diffBind report Fold scale
2
0
Entering edit mode
@joseluisruiz-16772
Last seen 3 months ago
Spain

Hi, so I have obtained using the package diffBind a set of regions with significant differential signal between 2 conditions. In the diffbind report, there is a column called "Fold". I guess this is like log2FoldChange in DESeq2, but I think I'm failing in the interpretation. Can anyone confirm if this column is already in log2 scale? I have looked everywhere and I'm still not sure on the scale of this column.

Thank for your help!

diffBind Fold Change • 2.6k views
ADD COMMENT
1
Entering edit mode
Rory Stark ★ 5.2k
@rory-stark-5741
Last seen 4 weeks ago
Cambridge, UK

The man page for dba.report() states they are in log form, I can confirm these are specifically log2(). The normalized read concentration values are also log2().

ADD COMMENT

Login before adding your answer.

Traffic: 684 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6