Hello everyone,
I'm having a problem with the package Gviz. I can't load it and I get this error:
library(Gviz)
Error : package or namespace load failed for ‘Gviz’:
object ‘path’ is not exported by 'namespace:Rsamtools'
Thank you in advance!!
R version 3.5.1 (2018-07-02) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200)
Matrix products: default
locale:
[1] LCCOLLATE=SpanishSpain.1252 LCCTYPE=SpanishSpain.1252
[3] LCMONETARY=SpanishSpain.1252 LCNUMERIC=C
[5] LCTIME=Spanish_Spain.1252
attached base packages: [1] grid stats4 parallel stats graphics grDevices utils datasets [9] methods base
other attached packages:
[1] stringr1.3.1 httr1.3.1
[3] biomaRt2.38.0 import1.1.0
[5] VariantAnnotation1.28.3 gridSVG1.6-0
[7] gridExtra2.3 gridBase0.4-7
[9] fpc2.1-11.1 RCurl1.95-4.11
[11] bitops1.0-6 PKI0.1-5.1
[13] base64enc0.1-3 rsconnect0.8.8
[15] cowplot0.9.3 prettydoc0.2.1
[17] reshape21.4.3 ggplot23.0.0
[19] seqinr3.4-5 rmarkdown1.10
[21] GenomicAlignments1.18.0 SummarizedExperiment1.12.0
[23] DelayedArray0.8.0 BiocParallel1.10.1
[25] matrixStats0.54.0 Biobase2.42.0
[27] shinydashboardPlus0.6.0.9000 dplyr0.7.8
[29] shinycssloaders0.2.0 shinydashboard0.7.0
[31] shiny1.1.0 Rsamtools1.34.0
[33] Biostrings2.50.1 XVector0.22.0
[35] GenomicRanges1.34.0 GenomeInfoDb1.18.1
[37] IRanges2.16.0 S4Vectors0.20.1
[39] BiocGenerics_0.28.0
loaded via a namespace (and not attached):
[1] colorspace1.3-2 class7.3-14
[3] modeltools0.2-22 mclust5.4.2
[5] rprojroot1.3-2 htmlTable1.12
[7] dichromat2.0-0 rstudioapi0.7
[9] flexmix2.3-14 bit640.9-7
[11] mvtnorm1.0-8 interactiveDisplayBase1.14.0
[13] AnnotationDbi1.44.0 splines3.5.1
[15] robustbase0.93-3 knitr1.20
[17] ade41.7-13 Formula1.2-3
[19] jsonlite1.6 kernlab0.9-27
[21] cluster2.0.7-1 BiocManager1.30.4
[23] compiler3.5.1 backports1.1.2
[25] assertthat0.2.0 Matrix1.2-14
[27] lazyeval0.2.1 later0.7.5
[29] acepack1.4.1 htmltools0.3.6
[31] prettyunits1.0.2 tools3.5.1
[33] bindrcpp0.2.2 gtable0.2.0
[35] glue1.3.0 GenomeInfoDbData0.99.0
[37] Rcpp1.0.0 trimcluster0.1-2.1
[39] rtracklayer1.42.1 mime0.6
[41] XML3.98-1.16 DEoptimR1.0-8
[43] AnnotationHub2.14.1 zlibbioc1.28.0
[45] MASS7.3-51.1 scales1.0.0
[47] BSgenome1.50.0 hms0.4.2
[49] promises1.0.1 ProtGenerics1.8.0
[51] AnnotationFilter1.6.0 RColorBrewer1.1-2
[53] yaml2.2.0 curl3.2
[55] memoise1.1.0 rpart4.1-13
[57] latticeExtra0.6-28 stringi1.2.4
[59] RSQLite2.1.1 checkmate1.9.0
[61] GenomicFeatures1.34.1 prabclus2.2-6
[63] rlang0.3.0.1 pkgconfig2.0.2
[65] evaluate0.11 lattice0.20-35
[67] purrr0.2.5 bindr0.1.1
[69] htmlwidgets1.2 bit1.1-14
[71] tidyselect0.2.5 plyr1.8.4
[73] magrittr1.5 R62.2.2
[75] Hmisc4.1-1 DBI1.0.0
[77] pillar1.3.0 foreign0.8-70
[79] withr2.1.2 survival2.42-3
[81] nnet7.3-12 tibble1.4.2
[83] crayon1.3.4 progress1.2.0
[85] data.table1.11.8 blob1.1.1
[87] diptest0.75-7 digest0.6.18
[89] xtable1.8-2 httpuv1.4.5
[91] munsell_0.5.0
Hi, what is the version of
Gviz
package you are using? Best RobertHello Robert, thank you for your fast answer! This is the version of Gviz 1.26.4
Make sure that your packages are from the correct version of Bioconductor. For your version of R / Bioconductor, use
Alright, it was solved. I just updated all the packages to the last version. Thank you!!