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I installed the GeneGA package but got an error message while trying the example:
seqfile = system.file("sequence", "EGFP.fasta", package="GeneGA") seq = unlist(getSequence(read.fasta(seqfile), as.string=TRUE)) GeneGA.result = GeneGA(sequence=seq, popSize=40, iters=100, crossoverRate=0.3, mutationChance=0.05, region=c(1,60))
This is the error message I get after the GeneGA.result:
The current generation is: 1 Error in index02:index01 : argument of length 0
Someone else experienced a similar error while playing with the example (GeneGA Error Message). Does anyone know how to fix this error?
And here is my session Info.
> sessionInfo() R version 3.5.1 (2018-07-02) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200) Matrix products: default locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C LC_TIME=English_United States.1252 attached base packages: [1] stats4 parallel stats graphics grDevices utils datasets methods base other attached packages: [1] GeneGA_1.32.0 hash_2.2.6 seqinr_3.4-5 bindrcpp_0.2.2 R.utils_2.7.0 R.oo_1.22.0 R.methodsS3_1.7.1 [8] Peptides_2.4 forcats_0.3.0 stringr_1.3.1 dplyr_0.7.8 purrr_0.2.5 readr_1.3.0 tidyr_0.8.2 [15] tibble_1.4.2 ggplot2_3.1.0 tidyverse_1.2.1 UniProt.ws_2.22.0 RCurl_1.95-4.11 bitops_1.0-6 RSQLite_2.1.1 [22] data.table_1.11.8 Biostrings_2.50.1 XVector_0.22.0 IRanges_2.16.0 S4Vectors_0.20.1 BiocGenerics_0.28.0