Hi everyone,
I am using genotype.Illumina() in R packge crlmm to deal with Illumina genotyping data (idat file). However, some errors appear as follows:
cnSet <- genotype.Illumina(sampleSheet=samplesheet, arrayNames=arrayNames,arrayInfoColNames=arrayInfo, cdfName="human370v1c",batch=batch)
Quantile normalizing 1 arrays by 12 strips.
|======================================================================| 100%
Calibrating 1 arrays.
| | 0%Error in quantile.default(M, c(1, 5)/6, names = FALSE) :
missing values and NaN's not allowed if 'na.rm' is FALSE
Please help me solve this problem
Thank you very much
Best