Hi,

I have analysed some Infinium EPIC array, methylation data using ChAMP. I'd like to export the beta values as bed/wig/whatever to view in UCSC/IGV along side some RNAseq data. Is there an off the shelf function to do this (because I can't find one) or am I stuck with writing my own?

Cheers,

Hello:

Sorry that ChAMP cannot export any bed/wig files for IGV visualization. I may consider to include these functionality in future version.

Best

Yuan Tian