Users, My install of affylmGUI works as expected apart from when I try to obtain results and reports. It gives me the error below and then just displays the probe ID in the output instead of gene names. Has the location of the file changed or can I specify a way of finding it? [1] "Attempting to download mouse4302 from http://www.bioconductor.org/packages/data/annotation/1.7/" Error in download.file(fileURL, destFile, mode = "wb", quiet = TRUE, method = method) : cannot open URL 'http://www.bioconductor.org/packages/data/annotation/1.7//mouse4302_1 .6.9.zip' In addition: Warning message: cannot open: HTTP status was '404 Not Found' Note: Using download type: Win32 Any ideas? Lee -------------------------------------------------------------- Dr Lee Parry Research Associate Cardiff University School of Biosciences Bioscience 3 Cardiff CF10 3US S. Wales UK Office Tel. +44-29-20875139 www.cardiff.ac.uk/biosi/

On 16 Jan 2006, parryl3 at cardiff.ac.uk wrote: > Users, > > My install of affylmGUI works as expected apart from when I try to > obtain results and reports. It gives me the error below and then > just displays the probe ID in the output instead of gene names. > > Has the location of the file changed or can I specify a way of > finding it? > > [1] "Attempting to download mouse4302 from > http://www.bioconductor.org/packages/data/annotation/1.7/" Error in > download.file(fileURL, destFile, mode = "wb", quiet = TRUE, method = > method) : cannot open URL > 'http://www.bioconductor.org/packages/data/annotation/1.7//mouse4302 _1.6.9.zip' > In addition: Warning message: cannot open: HTTP status was '404 Not > Found' Note: Using download type: Win32 > > Any ideas? I'm not sure how affylmGUI is trying find packages, but it seems to be confused about their location. The annotation package would never have been at the URL listed. You can install the mouse4302 annotation data package (and any other Bioconductor package) using the following R commands: source("http://bioconductor.org/biocLite.R") biocLite("mouse4302") Hopefully that will get you going. In the meantime, we will try to figure out what's going on with affylmGUI for package installation. Thanks for the report! Best, + seth