Hi
i am tying to import my bam files for MEDIP-seq analysis.
my bam files are in "MEDIPS_BAMs" directory
i am using the following command :
> AKM-ANF_MeDIP = MEDIPS.createSet(file = "MEDIPS_BAMs/AKM-ANF.sorted.bam", BSgenome = BSgenome.Oeuropaea.IOGC.v1, extend = 300, shift = 0, uniq = TRUE, window_size = 100).
i get the following error message:
Error in as.environment(pos) :
no item called "paste("package:", BSgenome, sep = "")" on the search list
In addition: Warning message:
In ls(paste("package:", BSgenome, sep = "")) :
‘paste("package:", BSgenome, sep = "")’ converted to character string
your help is very appreciated .
oussama