Some time ago I recall someone posting a message to the bioconductor website saying they had developed a heatmap/clustering package that would be included in the next release of Bioconductor. Can anyone else remember this? Or point me to it? Stephen Henderson WIBR, UCL ********************************************************************** This email and any files transmitted with it are confidential an... {{dropped}}

Hi, It will be in the next release of R (about 2 weeks away), for the impatient you can get pre-release snapshots are available (for unix via rsync and for windows, I think Duncan Murdoch has them up,) Regards, Robert On Wed, Apr 02, 2003 at 06:00:06PM +0100, Stephen Henderson wrote: > Some time ago I recall someone posting a message to the bioconductor website > saying they had developed a heatmap/clustering package that would be > included in the next release of Bioconductor. > > Can anyone else remember this? Or point me to it? > > Stephen Henderson > WIBR, UCL > > > ********************************************************************** > This email and any files transmitted with it are confidential an... {{dropped}} > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor -- +--------------------------------------------------------------------- ------+ | Robert Gentleman phone : (617) 632-5250 | | Associate Professor fax: (617) 632-2444 | | Department of Biostatistics office: M1B20 | | Harvard School of Public Health email: rgentlem@jimmy.harvard.edu | +--------------------------------------------------------------------- ------+

>>>>> "Stephen" == Stephen Henderson <s.henderson@ucl.ac.uk> >>>>> on Wed, 2 Apr 2003 18:00:06 +0100 writes: Stephen> Some time ago I recall someone posting a message to Stephen> the bioconductor website saying they had developed Stephen> a heatmap/clustering package that would be included Stephen> in the next release of Bioconductor. Andy Liaw did the post. Robert Gentleman (and me to less extent) too it up, generalized it a bit and added it as heatmap() to "standard R" (the "mva" package) -- for R version 1.7.0 which is now in beta testing (Release planned April 16). Martin Maechler <maechler@stat.math.ethz.ch> http://stat.ethz.ch/~maechler/ Seminar fuer Statistik, ETH-Zentrum LEO C16 Leonhardstr. 27 ETH (Federal Inst. Technology) 8092 Zurich SWITZERLAND phone: x-41-1-632-3408 fax: ...-1228 <><

Hi Stephen, to refer to previous postings to the list, please look at the archives at: http://www.stat.math.ethz.ch/mailman/listinfo/bioconductor A function "heatmap" will be in the package mva of R 1.7.0, which you should be able to obtain via rsync from CRAN. Best regards ------------------------------------- Wolfgang Huber http://www.dkfz.de/mga/whuber Division of Molecular Genome Analysis German Cancer Research Center Heidelberg, Germany ------------------------------------- On Wed, 2 Apr 2003, Stephen Henderson wrote: > Some time ago I recall someone posting a message to the bioconductor website > saying they had developed a heatmap/clustering package that would be > included in the next release of Bioconductor. > > Can anyone else remember this? Or point me to it? > > Stephen Henderson > WIBR, UCL >

Thanks to those who replied. I've been looking for the mva package on CRAN, which I currently have installed. It doesn't seem to be with the main package sources presently (possibly as it is due for update). I also haven't been able to find the newer pre-release snapshot as suggested. Where might I find this? Ps What is rsync? -----Original Message----- From: Robert Gentleman [mailto:rgentlem@jimmy.harvard.edu] Sent: Wednesday, April 02, 2003 11:43 PM To: Stephen Henderson Cc: bioconductor@stat.math.ethz.ch Subject: Re: [BioC] heatmaps Hi, It will be in the next release of R (about 2 weeks away), for the impatient you can get pre-release snapshots are available (for unix via rsync and for windows, I think Duncan Murdoch has them up,) Regards, Robert On Wed, Apr 02, 2003 at 06:00:06PM +0100, Stephen Henderson wrote: > Some time ago I recall someone posting a message to the bioconductor website > saying they had developed a heatmap/clustering package that would be > included in the next release of Bioconductor. > > Can anyone else remember this? Or point me to it? > > Stephen Henderson > WIBR, UCL > > > ********************************************************************** > This email and any files transmitted with it are confidential an... {{dropped}} > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor -- +--------------------------------------------------------------------- ------ + | Robert Gentleman phone : (617) 632-5250 | | Associate Professor fax: (617) 632-2444 | | Department of Biostatistics office: M1B20 | | Harvard School of Public Health email: rgentlem@jimmy.harvard.edu | +--------------------------------------------------------------------- ------ + _______________________________________________ Bioconductor mailing list Bioconductor@stat.math.ethz.ch https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor