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hemi.luan
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@hemiluan-11345
Last seen 6.2 years ago
How to monitor the performance of MS-based omics data? Which package can be used for large-scale samples?
There's no package that gives quality control metrics for all of the different varieties of proteomics assays. You could rephrase your question to specify if you are considering DDA, DIA or SRM proteomics.
Consider also searching for omics in the biocViews search box with any other key terms to get a potential list of packages
http://bioconductor.org/packages/release/BiocViews.html#___Software
Also consider proteomic workflows:
http://bioconductor.org/packages/release/BiocViews.html#___ProteomicsWorkflow