Dear allWhen I use the 'GenTable' command to pass topGO result objects to look at the results, I can only see the top 10 GOs listed there. I would like to be able to specify what lists I want to see by condition, such as "top 100" or "by p-value cutoff" etc. What are the parameters available currently to do that? I am unable to find any information on them. Also in some cases the GO descriptions are truncated, is there a way to fix this? Am I missing some parameter here? Just as a note the 'GenTable' command is the one currently recommended but information only on the old 'genTable' command is available in the 'topGO' vignette. Kindly help. Thanks BALA. [[alternative HTML version deleted]]

Alright - had to look at the new package instructions for 'GenTable'.Still wondering about settings for the GO Terms and graphs. thanks BALA. On Wed, Oct 1, 2008 at 12:47 PM, balag Ganesan <bala.g@aggiemail.usu.edu>wrote: > Dear allWhen I use the 'GenTable' command to pass topGO result objects to > look at the results, I can only see the top 10 GOs listed there. > I would like to be able to specify what lists I want to see by condition, > such as "top 100" or "by p-value cutoff" etc. > What are the parameters available currently to do that? I am unable to find > any information on them. > Also in some cases the GO descriptions are truncated, is there a way to fix > this? Am I missing some parameter here? > Just as a note the 'GenTable' command is the one currently recommended but > information only on the old 'genTable' command is available in the 'topGO' > vignette. > Kindly help. > Thanks > BALA. > [[alternative HTML version deleted]]