Hi there,
I used DESeq to identify differentially expressed RNAs in my two samples. I have moderated t-test statistics that I used in limma's cameraPR() function and got GSA scores with p-values.
How do I plot this data similar to the enrichment plot that Broad Institute's GSEA Java app produces? Here's how it looks. https://www.google.com/search?q=GSEA+broad&source=lnms&tbm=isch&sa=X&ved=0ahUKEwirk4Kh9NzdAhWK6YMKHQodAiEQ_AUIDygC&biw=960&bih=534#imgrc=nZFTQ2YoFMG9OM:
Thanks
Jay