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rj.innet
•
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@rjinnet-17036
Last seen 6.2 years ago
I was running the runCommandline command in Rstudio and encountering the error as given below
> bampaths <- runCommandline(args=args)
bash: module: command not found
bash: module: command not found
Error in system2(command, args = commandargs, stdout = TRUE, stderr = TRUE) :
error in running command
Any insight and answers to solve this error will be highly appreciated.
Thanks!!
Could you please provide the command(s) that you use to generate the
args
object that is used byrunCommandline
. In addition, please provide the output ofsessionInfo()
executed in an R session right after the error occurred.Thomas
As my system does not have a module system, I edited the
*.param
files, by deleting the modules option line, which was used to generate the args object given torunCommandline
. But the error still persists.